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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13804993_13805850_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13804993 - 13805850
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
VKMINHDSDKENVRKWKVRS
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.9
0.74
0.9
78.8
38.7
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014921
13769635 - 13808739
39105