Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138052211_138053177_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

138052211 - 138053177

Intron Length:

967

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCGTTAATGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TGTTCGTTAATG

Flanking Amino Acid:

SFERHEDAQKAVDEMNGKEL

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

81.6

33.2

Major BPS

0.72

78.4

31.2

Major PPT

0.31

1.1

65.1

39.4

Minor 5ss

55.3

0.18

2.7

73.8

36.4

Minor BPS

63.9

0.3

2.1

71.98

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001129

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001456

138043286 - 138056982

13697