About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138052211_138053401_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138052211 - 138053401
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTACTTTTAAAA
Flanking Amino Acid:
SFERHEDAQKGVNLYVKNLD
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.3
0.75
0.7
81.7
29.5
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
63.5
0.42
1.3
70.66
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040896
138043286 - 138056982
13697