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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138053316_138053401_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
138053316 - 138053401
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCTTT
5'SS Class:
weak_major
3'SS Sequence:
ACTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTACTTTTAAAA
Flanking Amino Acid:
MKQDRITRYQGVNLYVKNLD
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
72.6
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.3
0.75
0.7
81.7
29.5
Minor 5ss
57.9
0.27
2.4
73.9
42.6
Minor BPS
63.5
0.42
1.3
70.66
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001456
138043286 - 138056982
13697