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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138054238_138054409_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138054238 - 138054409
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTGACA
Flanking Amino Acid:
SGYFMAAIPQTQNRAAYYPA
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
100
1.24
0.5
100
0
Major PPT
79.3
0.66
1
76
37.6
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
65.4
0.48
1.5
77.03
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040896
138043286 - 138056982
13697
ENSAPLT00000001456
138043286 - 138056982
13697