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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138056305_138056479_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138056305 - 138056479
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
AGATCTGTGACT
Flanking Amino Acid:
APPQEQKQMLGERLFPLIQS
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
77.6
0.62
0.8
69.9
40.6
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
51.5
0.13
2
70.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040896
138043286 - 138056982
13697
ENSAPLT00000001456
138043286 - 138056982
13697