About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138065397_138070169_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138065397 - 138070169
Intron Length:
4773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GGCTATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCACTGATG
Flanking Amino Acid:
YRQLRRWDEQLRQVFGSAVP
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
75.7
0.58
1
68.8
41.7
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
48.6
-0.2
2
60.4
41.7

Associated Gene:

Gene:
SNX31
Ensembl Gene ID:
ENSAPLG00000024380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034951
138065178 - 138094185
29008