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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13807873_13808622_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
13807873 - 13808622
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTATATCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTCCTATATC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
74.8
0.56
0.9
69.2
35.2
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
56.3
0.18
2
70.08
42

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044996
13769635 - 13813374
43740
ENSAPLT00000030001
13769635 - 13813374
43740
ENSAPLT00000014921
13769635 - 13808739
39105