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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138078878_138084033_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138078878 - 138084033
Intron Length:
5156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
TTGTTTTTAAAG
Flanking Amino Acid:
TSDTAERILQVTSCKMGIAR
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
58.7
0.22
1.2
67
38
Major PPT
80.8
0.69
1
82.2
33.3
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
65.9
0.36
1.4
67.73
40.3

Associated Gene:

Gene:
SNX31
Ensembl Gene ID:
ENSAPLG00000024380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034951
138065178 - 138094185
29008