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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138084125_138085465_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138084125 - 138085465
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAATAT
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
IQDRDDGALSVVKKVADFEL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.8
41
Major BPS
48.9
-0
1.1
45
36.5
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
44.3
-0.6
2.9
56
43.7
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
SNX31
Ensembl Gene ID:
ENSAPLG00000024380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034951
138065178 - 138094185
29008