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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138085554_138087052_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
138085554 - 138087052
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAAG
5'SS Class:
major
3'SS Sequence:
TGGCATGGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTCACT
Flanking Amino Acid:
DLDCKLGIRKWYMDPSLDTL
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
66.7
40.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
46.4
-0.2
1.2
41.1
41.9
Minor 5ss
33.4
-1.9
2.8
36.5
41.9
Minor BPS
66.1
0.59
1.9
88.66
36.3

Associated Gene:

Gene:
SNX31
Ensembl Gene ID:
ENSAPLG00000024380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034951
138065178 - 138094185
29008