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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138087154_138088334_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
138087154 - 138088334
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCTAACTTC
5'SS Class:
weak_major
3'SS Sequence:
CGTGCCTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAAAT
Flanking Amino Acid:
VKLKALLNFKTNNFSSVFLV
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.4
57.2
44.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73
0.52
0.9
64.9
36.5
Minor 5ss
35.5
-1.6
4.1
51.5
39.7
Minor BPS
59.2
0.37
1.6
76.7
40.1

Associated Gene:

Gene:
SNX31
Ensembl Gene ID:
ENSAPLG00000024380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034951
138065178 - 138094185
29008