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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13808740_13812782_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13808740 - 13812782
Intron Length:
4043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATGAAAATAACA
Flanking Amino Acid:
VLRHNALIQEVISQSRARFN
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
44.8
-0.4
2
58.4
40.2

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030001
13769635 - 13813374
43740
ENSAPLT00000044996
13769635 - 13813374
43740