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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138089174_138090174_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138089174 - 138090174
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCCTGTTTATCC
Flanking Amino Acid:
WEWIILYTKQAFLLSSCLKK
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.1
0.77
0.8
81.8
29.9
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
49.2
-0
2
61.09
45

Associated Gene:

Gene:
SNX31
Ensembl Gene ID:
ENSAPLG00000024380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034951
138065178 - 138094185
29008