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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138090265_138094089_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138090265 - 138094089
Intron Length:
3825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGTGTAGG
5'SS Class:
major
3'SS Sequence:
TGTTTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTCTTTTAACT
Flanking Amino Acid:
NKVPEMVSMCVVHSSFISRK
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.1
54.4
44.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
37.8
-1.4
2.7
42.3
44.6
Minor BPS
76.9
0.92
1.1
87.39
31.2

Associated Gene:

Gene:
SNX31
Ensembl Gene ID:
ENSAPLG00000024380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034951
138065178 - 138094185
29008