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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138105838_138107139_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138105838 - 138107139
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GGCATTACTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
GTGGCATTACTT
Flanking Amino Acid:
LVSNGLKIDICNHQGATPLV
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
63.5
0.31
1
59.4
41.6
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
47.8
-0
2
65.42
45.4

Associated Gene:

Gene:
ANKRD46
Ensembl Gene ID:
ENSAPLG00000017801
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043000
138100351 - 138111631
11281
ENSAPLT00000030809
138095624 - 138111171
15548
ENSAPLT00000028194
138103319 - 138111393
8075
ENSAPLT00000026111
138095624 - 138111171
15548