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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138107299_138110954_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138107299 - 138110954
Intron Length:
3656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTACA
5'SS Class:
major
3'SS Sequence:
TAATCCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTATTTTTAACT
Flanking Amino Acid:
LETMQTAESESAMESHSLLN
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.2
34
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.7
0.58
0.9
70.3
35.7
Minor 5ss
42.2
-0.9
2.4
52.6
43.9
Minor BPS
77.2
0.93
1.1
85.13
34.9

Associated Gene:

Gene:
ANKRD46
Ensembl Gene ID:
ENSAPLG00000017801
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030809
138095624 - 138111171
15548
ENSAPLT00000028194
138103319 - 138111393
8075
ENSAPLT00000026111
138095624 - 138111171
15548
ENSAPLT00000043000
138100351 - 138111631
11281