About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138214745_138217111_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138214745 - 138217111
Intron Length:
2367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTGTGTTTAATA
Flanking Amino Acid:
VSPVVAAVTVGIGVPIMLAY
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
58.5
0.26
1.8
66.12
41.6

Associated Gene:

Gene:
RNF19A
Ensembl Gene ID:
ENSAPLG00000015669
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016342
138169354 - 138220850
51497