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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138219596_138219978_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138219596 - 138219978
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
ATATACTGACAG
Flanking Amino Acid:
SILNSYIPLDREGNSMEVQV
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
83.6
0.76
0.8
77.1
37.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
43.8
-0.6
2
50.42
42.7

Associated Gene:

Gene:
RNF19A
Ensembl Gene ID:
ENSAPLG00000015669
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016342
138169354 - 138220850
51497