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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138230030_138231959_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138230030 - 138231959
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATCTC
5'SS Class:
major
3'SS Sequence:
TTCTTCTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TCTTCTGTGAAG
Flanking Amino Acid:
KQRKKISVQEVTESDEQEER
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
69.7
41.2
Major BPS
75.5
0.63
1
66
40.9
Major PPT
72.5
0.51
1.1
75
33.7
Minor 5ss
37.1
-1.5
3.3
52.9
44.2
Minor BPS
47.7
-0.3
2.2
58.91
43.4

Associated Gene:

Gene:
SPAG1
Ensembl Gene ID:
ENSAPLG00000015431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016109
138229402 - 138268168
38767