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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138236455_138239397_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138236455 - 138239397
Intron Length:
2943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TTTTGTAACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CCTTTTGTAACA
Flanking Amino Acid:
TNREEQLQMNREKAEEEFKT
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
70.9
40.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
71
0.47
0.9
66.7
38.5
Minor 5ss
39.8
-1.1
3
51.2
40
Minor BPS
53.3
0.1
2
65.59
41.9

Associated Gene:

Gene:
SPAG1
Ensembl Gene ID:
ENSAPLG00000015431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016109
138229402 - 138268168
38767