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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138239574_138243663_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138239574 - 138243663
Intron Length:
4090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATGAAAAGT
Flanking Amino Acid:
SIQAANDSVNRITKTLIDQD
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
38.8
-0.7
2.5
64.65
45.8

Associated Gene:

Gene:
SPAG1
Ensembl Gene ID:
ENSAPLG00000015431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016109
138229402 - 138268168
38767