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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138257405_138258066_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138257405 - 138258066
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTAATGATG
Flanking Amino Acid:
DYVEAVTYYTRSISVLPTAA
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.1
0.81
0.8
84.3
30.3
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
45.7
-0.4
1.9
57.77
37.7

Associated Gene:

Gene:
SPAG1
Ensembl Gene ID:
ENSAPLG00000015431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016109
138229402 - 138268168
38767