About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138258777_138259883_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138258777 - 138259883
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TTATTAATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATT
Flanking Amino Acid:
NIPRDYSEWDKFDVEKECSK
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
75.7
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.3
0.46
1.1
73.8
39.7
Minor 5ss
47.3
-0.3
2.5
57.4
41.7
Minor BPS
76.9
0.92
1.4
92.73
28.9

Associated Gene:

Gene:
SPAG1
Ensembl Gene ID:
ENSAPLG00000015431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016109
138229402 - 138268168
38767