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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138259952_138264539_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138259952 - 138264539
Intron Length:
4588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCCA
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTGTCTTACAG
Flanking Amino Acid:
CSSSCLPANQNEKLQNKQRN
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
64.2
41.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
46.1
-0.4
2.5
60.1
44.3
Minor BPS
49.2
-0.2
1.9
58.22
43.6

Associated Gene:

Gene:
SPAG1
Ensembl Gene ID:
ENSAPLG00000015431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016109
138229402 - 138268168
38767