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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138264666_138267778_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138264666 - 138267778
Intron Length:
3113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TACTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATTACTTATTT
Flanking Amino Acid:
EWETINGELMSWVTEMHEDD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.1
61.8
39.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83.9
0.76
0.8
81.3
34.9
Minor 5ss
36.8
-1.5
3.6
51.8
47.2
Minor BPS
64.6
0.54
1.8
82.36
38.9

Associated Gene:

Gene:
SPAG1
Ensembl Gene ID:
ENSAPLG00000015431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016109
138229402 - 138268168
38767