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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138267939_138268026_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138267939 - 138268026
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACATA
5'SS Class:
major
3'SS Sequence:
TTCCATTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTTTGTAACT
Flanking Amino Acid:
KHLEKILRVLRSGEEGCYPD
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
73
37.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.5
0.53
1
74
34.2
Minor 5ss
48.4
-0.1
2.7
65.8
45.4
Minor BPS
62.8
0.48
2
82.56
39.6

Associated Gene:

Gene:
SPAG1
Ensembl Gene ID:
ENSAPLG00000015431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016109
138229402 - 138268168
38767