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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138270887_138271350_R

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
138270887 - 138271350
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TGCACCATTCCAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
RIMYKKRTKRLVVFDAR*
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
64.4
42.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
69.4
0.44
1
58.7
41.7
Minor 5ss
98.3
1.62
0.6
94.6
16.9
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
POLR2K
Ensembl Gene ID:
ENSAPLG00000027673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020839
138270864 - 138272295
1432