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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138283670_138284555_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138283670 - 138284555
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTTAAAT
Flanking Amino Acid:
LDALTVESLCSIWKVSKNWR
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.7
0.69
0.9
72.7
42.1
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
70
0.71
1.3
80.49
34.7

Associated Gene:

Gene:
FBXO43
Ensembl Gene ID:
ENSAPLG00000015403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016055
138282225 - 138286053
3829