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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138301490_138309173_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138301490 - 138309173
Intron Length:
7684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
ACTTTCCAAACT
Flanking Amino Acid:
DYFNEFLSLPTFAQPVKFNP
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
87.6
0.85
0.6
84.2
23.7
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
52.5
0.16
2
74.35
42.6

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039049
138298781 - 138359323
60543