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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138309396_138314346_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138309396 - 138314346
Intron Length:
4951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
TCTTTTTTAATA
Flanking Amino Acid:
FNIDPNYNTMRLDREQAVQW
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
82.8
0.74
0.8
81
29.6
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
76
0.81
1.1
78
33.3

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039049
138298781 - 138359323
60543