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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138314433_138317944_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138314433 - 138317944
Intron Length:
3512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCAG
5'SS Class:
major
3'SS Sequence:
CATTTAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTGTCTGAACA
Flanking Amino Acid:
FLESDCYFEYRLAKLISQVE
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
55
43.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.8
0.6
0.9
67.2
42.5
Minor 5ss
36.3
-1.6
3.2
46.8
48.6
Minor BPS
62.3
0.38
1.6
71.44
41

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039049
138298781 - 138359323
60543