About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138318554_138321763_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
138318554 - 138321763
Intron Length:
3210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTCAAATTC
5'SS Class:
weak_major
3'SS Sequence:
AATGCAGAAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTTCTGATTT
Flanking Amino Acid:
TDSFTRPVASSSLSKEYHQW
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.4
0.01
1.3
55.7
36.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
49.6
-0
1.1
41.9
41.6
Minor 5ss
39.1
-1.2
3.2
52.7
39.4
Minor BPS
57
0.3
1.7
75.98
41.3

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031150
138318484 - 138359323
40840