Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138321956_138322114_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

138321956 - 138322114

Intron Length:

159

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGGGCAGG

5'SS Class:

major

3'SS Sequence:

GCAGATAATGAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGATAAT

U12 Branch Point Sequence:

TAGCAGATAATG

Flanking Amino Acid:

QKLESASKEEIACGTAEPLF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.1

53.4

45.5

Major BPS

63.8

0.34

1.2

64.1

39.8

Major PPT

47.9

-0.1

1.2

42.5

Minor 5ss

33.7

-1.9

3.1

38.9

40.9

Minor BPS

39.1

-0.9

2.3

44.08

41.4

Associated Gene:

Gene:

RGS22

Ensembl Gene ID:

ENSAPLG00000016769

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031150

138318484 - 138359323

40840

ENSAPLT00000039049

138298781 - 138359323

60543