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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138322419_138322943_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
138322419 - 138322943
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTCC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTGACTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTTGTTTGACT
Flanking Amino Acid:
KVLKDTTRQQRQLDRMKKFY
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
61.3
38.4
Major BPS
75.8
0.64
1
65.8
41
Major PPT
65
0.34
1.1
61.7
43.7
Minor 5ss
54.5
0.15
2.3
69.1
41.6
Minor BPS
72
0.77
1.7
90.81
33.2

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039049
138298781 - 138359323
60543
ENSAPLT00000031150
138318484 - 138359323
40840