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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138323106_138324011_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138323106 - 138324011
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGTTTCATT
Flanking Amino Acid:
PEVVKPLLLYWGPRFCVTHS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.3
33.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
39
-1.2
2.8
45.4
44
Minor BPS
57.4
0.31
2.2
82.98
39.3

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039049
138298781 - 138359323
60543
ENSAPLT00000031150
138318484 - 138359323
40840