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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138328587_138330154_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138328587 - 138330154
Intron Length:
1568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
THFCEKSGNKLWKNSAYFWA
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.77
0.7
82.6
28
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039049
138298781 - 138359323
60543
ENSAPLT00000033484
138328503 - 138357832
29330
ENSAPLT00000031150
138318484 - 138359323
40840