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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138340033_138343682_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
138340033 - 138343682
Intron Length:
3650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGTTTCCA
5'SS Class:
weak_major
3'SS Sequence:
AATAACTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTAAATTAATA
Flanking Amino Acid:
FRKLQALHQEKCYEINSILK
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.1
46.8
37
Major BPS
83
0.82
0.8
82
24.9
Major PPT
63.2
0.3
1
52.4
42.6
Minor 5ss
36.5
-1.5
2.7
38.3
40.5
Minor BPS
53.5
0.11
1.8
67.66
38.1

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039049
138298781 - 138359323
60543