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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138343903_138344531_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138343903 - 138344531
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGTT
5'SS Class:
major
3'SS Sequence:
TTGGATTGCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTTATTTCATG
Flanking Amino Acid:
SPATRQQQEQLMHSGGGWGQ
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
70
40.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
63.5
0.3
1
62
44.1
Minor 5ss
40.8
-1
3.7
64.9
46.4
Minor BPS
49.3
-0.2
2
60.65
41.8

Associated Gene:

Gene:
RGS22
Ensembl Gene ID:
ENSAPLG00000016769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039049
138298781 - 138359323
60543
ENSAPLT00000033484
138328503 - 138357832
29330
ENSAPLT00000031150
138318484 - 138359323
40840