Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138346541_138348570_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

138346541 - 138348570

Intron Length:

2030

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTTGACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTTAT

U12 Branch Point Sequence:

CTTCTCTTGACA

Flanking Amino Acid:

KQEKTTRMWKHVDNKWVSSS

Intron Amino Acid Position:

697

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.7

82.6

33.6

Major BPS

76.3

0.65

67.3

39.3

Major PPT

0.65

0.9

75.6

32.9

Minor 5ss

21.7

-3.3

3.8

30.8

43.1

Minor BPS

70.6

0.64

1.2

75.39

35.8

Associated Gene:

Gene:

RGS22

Ensembl Gene ID:

ENSAPLG00000016769

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039049

138298781 - 138359323

60543

ENSAPLT00000033484

138328503 - 138357832

29330

ENSAPLT00000031150

138318484 - 138359323

40840