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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138375087_138376709_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138375087 - 138376709
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CGTTACTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TGTGCGTTACTT
Flanking Amino Acid:
VSLGCAALYKFGVAEPRKKA
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79
0.65
0.9
69.3
41.4
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
48.1
-0
2.4
71.98
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015371
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016012
138374973 - 138376829
1857