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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138384221_138390736_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138384221 - 138390736
Intron Length:
6516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTGCCTTATTT
Flanking Amino Acid:
KQQRVPCDVEADGARERLSE
Intron Amino Acid Position:
3952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80
0.68
0.9
77.3
35.6
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
65.1
0.55
1.7
80.47
41.8

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293