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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138394371_138401157_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138394371 - 138401157
Intron Length:
6787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTCACTAACT
Flanking Amino Acid:
GLSRLGISLLGAIAGIVDQP
Intron Amino Acid Position:
3775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
64.8
0.54
2
86.18
39.4

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015615
138383975 - 138838267
454293
ENSAPLT00000029347
138383975 - 138838267
454293