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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138401329_138402239_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138401329 - 138402239
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATCTT
5'SS Class:
major
3'SS Sequence:
TCCATGTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTCCATGTATT
Flanking Amino Acid:
TTSFVKHISKGTLTSITNLA
Intron Amino Acid Position:
3718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.1
41.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
67.9
0.4
1
65.7
40
Minor 5ss
38.1
-1.3
3.5
58.1
46.5
Minor BPS
46.3
-0.2
2
67.61
42.8

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293