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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138409138_138411729_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138409138 - 138411729
Intron Length:
2592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATCTA
5'SS Class:
major
3'SS Sequence:
CTCTCTCCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATGTGTTTACCT
Flanking Amino Acid:
VVDINNQGTQIVFLTGFGYV
Intron Amino Acid Position:
3345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
74.1
36.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
69.3
0.43
0.8
63.2
33
Minor 5ss
38.9
-1.3
3.1
49.9
40.7
Minor BPS
52.9
0.17
2
73.52
43.9

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293