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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138412642_138415059_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138412642 - 138415059
Intron Length:
2418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
AACACCTTATAT
Flanking Amino Acid:
GVRNESGFCTRAITLTYQEH
Intron Amino Acid Position:
3235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
82
0.72
0.8
80.7
31.3
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
51.1
0.11
1.8
65.98
43.9

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293