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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138421036_138422367_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138421036 - 138422367
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTATATATGACC
Flanking Amino Acid:
VQQLSGVQKQILICGRQTVC
Intron Amino Acid Position:
2730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
71.9
0.49
1
69.2
41.8
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
51.6
0.03
1.8
68.55
36.7

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293