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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138422524_138431768_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138422524 - 138431768
Intron Length:
9245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATGTATTGAAGT
Flanking Amino Acid:
YSWRSHKSPQLLHICIEGWG
Intron Amino Acid Position:
2678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
48.5
-0
1.9
68.03
42.8

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293