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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138431931_138438162_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138431931 - 138438162
Intron Length:
6232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCGA
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGGCTTTCATA
Flanking Amino Acid:
LNTAIQAWQQNQCPEAEELV
Intron Amino Acid Position:
2624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
61.5
44.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90.8
0.92
0.6
88.8
20.5
Minor 5ss
43.3
-0.7
2.9
56.6
47.6
Minor BPS
53.2
0.1
1.8
66.12
41.6

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293