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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138447972_138465718_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138447972 - 138465718
Intron Length:
17747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTGTTTTATCA
Flanking Amino Acid:
STADLGDVLQIPCSLEYWDE
Intron Amino Acid Position:
2381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.1
0.72
0.8
77
36
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
55.1
0.16
1.7
65.74
41.7

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293